AmoebaInPlaneAngleForce

class OpenMM::AmoebaInPlaneAngleForce

This class implements an interaction at trigonal centers corresponding to the projected in-plane angle bend energy between four particles. The interaction is defined by a 6th order polynomial in the angle between them. Only the quadratic term is set per-angle. The coefficients of the higher order terms each have a single value that is set globally.

To use it, create an AmoebaInPlaneAngleForce() object then call addAngle() once for each angle. After an angle has been added, you can modify its force field parameters by calling setAngleParameters(). This will have no effect on Contexts that already exist unless you call updateParametersInContext().

Methods

AmoebaInPlaneAngleForce() Create an AmoebaAngleForce.
getNumAngles() Get the number of in-plane angle terms in the potential function
setAmoebaGlobalInPlaneAngleCubic() Set the global cubic term
getAmoebaGlobalInPlaneAngleCubic() Get the global cubic term
setAmoebaGlobalInPlaneAngleQuartic() Set the global quartic term
getAmoebaGlobalInPlaneAngleQuartic() Get the global quartic term
setAmoebaGlobalInPlaneAnglePentic() Set the global pentic term
getAmoebaGlobalInPlaneAnglePentic() Get the global pentic term
setAmoebaGlobalInPlaneAngleSextic() Set the global sextic term
getAmoebaGlobalInPlaneAngleSextic() Get the global sextic term
addAngle() Add an angle term to the force field.
getAngleParameters() Get the force field parameters for an angle term.
setAngleParameters() Set the force field parameters for an angle term.
updateParametersInContext() Update the per-angle parameters in a Context to match those stored in this Force object.
usesPeriodicBoundaryConditions() Returns whether or not this force makes use of periodic boundary conditions.
AmoebaInPlaneAngleForce()

Create an AmoebaAngleForce.

int getNumAngles() const

Get the number of in-plane angle terms in the potential function

void setAmoebaGlobalInPlaneAngleCubic(double cubicK)

Set the global cubic term

Parameters:
  • cubicK – the cubic force constant for the angle
double getAmoebaGlobalInPlaneAngleCubic() const

Get the global cubic term

Returns:global cubicK term
void setAmoebaGlobalInPlaneAngleQuartic(double quarticK)

Set the global quartic term

Parameters:
  • quarticK – the quartic force constant for the angle
double getAmoebaGlobalInPlaneAngleQuartic() const

Get the global quartic term

Returns:global quartic term
void setAmoebaGlobalInPlaneAnglePentic(double penticK)

Set the global pentic term

Parameters:
  • penticK – the pentic force constant for the angle
double getAmoebaGlobalInPlaneAnglePentic() const

Get the global pentic term

Returns:global penticK term
void setAmoebaGlobalInPlaneAngleSextic(double sexticK)

Set the global sextic term

Parameters:
  • sexticK – the sextic force constant for the angle
double getAmoebaGlobalInPlaneAngleSextic() const

Get the global sextic term

Returns:global sextic term
int addAngle(int particle1, int particle2, int particle3, int particle4, double length, double quadraticK)

Add an angle term to the force field.

Parameters:
  • particle1 – the index of the first particle connected by the angle
  • particle2 – the index of the second particle connected by the angle
  • particle3 – the index of the third particle connected by the angle
  • particle4 – the index of the fourth particle connected by the angle
  • length – the equilibrium angle, measured in radians
  • quadraticK – the quadratic force constant for the angle measured in kJ/mol/radian^2
Returns:the index of the angle that was added
void getAngleParameters(int index, int &particle1, int &particle2, int &particle3, int &particle4, double &length, double &quadraticK) const

Get the force field parameters for an angle term.

Parameters:
  • index – the index of the angle for which to get parameters
  • particle1 – [out] the index of the first particle connected by the angle
  • particle2 – [out] the index of the second particle connected by the angle
  • particle3 – [out] the index of the third particle connected by the angle
  • particle4 – [out] the index of the fourth particle connected by the angle
  • length – [out] the equilibrium angle, measured in radians
  • quadraticK – [out] the quadratic force constant for the angle measured in kJ/mol/radian^2
void setAngleParameters(int index, int particle1, int particle2, int particle3, int particle4, double length, double quadraticK)

Set the force field parameters for an angle term.

Parameters:
  • index – the index of the angle for which to set parameters
  • particle1 – the index of the first particle connected by the angle
  • particle2 – the index of the second particle connected by the angle
  • particle3 – the index of the third particle connected by the angle
  • particle4 – the index of the fourth particle connected by the angle
  • length – the equilibrium angle, measured in radians
  • quadraticK – the quadratic force constant for the angle, measured in kJ/mol/radian^2
void updateParametersInContext(Context &context)

Update the per-angle parameters in a Context to match those stored in this Force object. This method provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it. Simply call setAngleParameters() to modify this object’s parameters, then call updateParametersInContext() to copy them over to the Context.

The only information this method updates is the values of per-angle parameters. The set of particles involved in an angle cannot be changed, nor can new angles be added.

bool usesPeriodicBoundaryConditions() const

Returns whether or not this force makes use of periodic boundary conditions.

Returns:true if nonbondedMethod uses PBC and false otherwise