Topology
==================================

.. currentmodule:: simtk.openmm.app.topology

.. autoclass:: Topology

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~Topology.__init__
      ~Topology.addAtom
      ~Topology.addBond
      ~Topology.addChain
      ~Topology.addResidue
      ~Topology.atoms
      ~Topology.bonds
      ~Topology.chains
      ~Topology.createDisulfideBonds
      ~Topology.createStandardBonds
      ~Topology.getNumAtoms
      ~Topology.getNumChains
      ~Topology.getNumResidues
      ~Topology.getPeriodicBoxVectors
      ~Topology.getUnitCellDimensions
      ~Topology.loadBondDefinitions
      ~Topology.residues
      ~Topology.setPeriodicBoxVectors
      ~Topology.setUnitCellDimensions