- c -
- calcDispersionCorrection()
: AmoebaVdwForceImpl
, NonbondedForceImpl
- calcEwaldParameters()
: NonbondedForceImpl
- calcForcesAndEnergy()
: AmoebaAngleForceImpl
, AmoebaBondForceImpl
, AmoebaGeneralizedKirkwoodForceImpl
, AmoebaInPlaneAngleForceImpl
, AmoebaMultipoleForceImpl
, AmoebaOutOfPlaneBendForceImpl
, AmoebaPiTorsionForceImpl
, AmoebaStretchBendForceImpl
, AmoebaTorsionTorsionForceImpl
, AmoebaVdwForceImpl
, AmoebaWcaDispersionForceImpl
, AndersenThermostatImpl
, CMAPTorsionForceImpl
, CMMotionRemoverImpl
, ContextImpl
, CustomAngleForceImpl
, CustomBondForceImpl
, CustomCompoundBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomHbondForceImpl
, CustomManyParticleForceImpl
, CustomNonbondedForceImpl
, CustomTorsionForceImpl
, DrudeForceImpl
, ForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, MonteCarloAnisotropicBarostatImpl
, MonteCarloBarostatImpl
, MonteCarloMembraneBarostatImpl
, NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
- calcKineticEnergy()
: ContextImpl
- calcLongRangeCorrection()
: CustomNonbondedForceImpl
- calcMapDerivatives()
: CMAPTorsionForceImpl
- calcParticleGroups()
: AndersenThermostatImpl
- calcPMEParameters()
: NonbondedForceImpl
- cleanup()
: BrownianIntegrator
, CustomIntegrator
, DrudeLangevinIntegrator
, DrudeSCFIntegrator
, Integrator
, LangevinIntegrator
, RPMDIntegrator
, VariableLangevinIntegrator
, VariableVerletIntegrator
, VerletIntegrator
- CMAPTorsionForce()
: CMAPTorsionForce
- CMAPTorsionForceImpl()
: CMAPTorsionForceImpl
- CMMotionRemover()
: CMMotionRemover
- CMMotionRemoverImpl()
: CMMotionRemoverImpl
- CollisionFrequency()
: AndersenThermostat
- computeKineticEnergy()
: BrownianIntegrator
, CustomIntegrator
, DrudeLangevinIntegrator
, DrudeSCFIntegrator
, Integrator
, LangevinIntegrator
, RPMDIntegrator
, VariableLangevinIntegrator
, VariableVerletIntegrator
, VerletIntegrator
- computeVirtualSites()
: Context
, ContextImpl
- Context()
: Context
- contextCreated()
: Platform
- contextDestroyed()
: Platform
- ContextImpl()
: ContextImpl
- Continuous1DFunction()
: Continuous1DFunction
- Continuous2DFunction()
: Continuous2DFunction
- Continuous3DFunction()
: Continuous3DFunction
- Copy()
: Continuous1DFunction
, Continuous2DFunction
, Continuous3DFunction
, Discrete1DFunction
, Discrete2DFunction
, Discrete3DFunction
, TabulatedFunction
- create2DNaturalSpline()
: SplineFitter
- create3DNaturalSpline()
: SplineFitter
- createCheckpoint()
: Context
, ContextImpl
- createExceptionsFromBonds()
: NonbondedForce
- createExclusionsFromBonds()
: CustomManyParticleForce
, CustomNonbondedForce
- createImpl()
: AmoebaAngleForce
, AmoebaBondForce
, AmoebaGeneralizedKirkwoodForce
, AmoebaInPlaneAngleForce
, AmoebaMultipoleForce
, AmoebaOutOfPlaneBendForce
, AmoebaPiTorsionForce
, AmoebaStretchBendForce
, AmoebaTorsionTorsionForce
, AmoebaVdwForce
, AmoebaWcaDispersionForce
, AndersenThermostat
, CMAPTorsionForce
, CMMotionRemover
, CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
, DrudeForce
, Force
, GBSAOBCForce
, GBVIForce
, HarmonicAngleForce
, HarmonicBondForce
, MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
, NonbondedForce
, PeriodicTorsionForce
, RBTorsionForce
- createKernel()
: Platform
- createKernelImpl()
: KernelFactory
- createNaturalSpline()
: SplineFitter
- createPeriodicSpline()
: SplineFitter
- cross()
: Vec3
- CustomAngleForce()
: CustomAngleForce
- CustomAngleForceImpl()
: CustomAngleForceImpl
- CustomBondForce()
: CustomBondForce
- CustomBondForceImpl()
: CustomBondForceImpl
- CustomCompoundBondForce()
: CustomCompoundBondForce
- CustomCompoundBondForceImpl()
: CustomCompoundBondForceImpl
- CustomExternalForce()
: CustomExternalForce
- CustomExternalForceImpl()
: CustomExternalForceImpl
- CustomGBForce()
: CustomGBForce
- CustomGBForceImpl()
: CustomGBForceImpl
- CustomHbondForce()
: CustomHbondForce
- CustomHbondForceImpl()
: CustomHbondForceImpl
- CustomIntegrator()
: CustomIntegrator
- CustomManyParticleForce()
: CustomManyParticleForce
- CustomManyParticleForceImpl()
: CustomManyParticleForceImpl
- CustomNonbondedForce()
: CustomNonbondedForce
- CustomNonbondedForceImpl()
: CustomNonbondedForceImpl
- CustomTorsionForce()
: CustomTorsionForce
- CustomTorsionForceImpl()
: CustomTorsionForceImpl