- r -

• readParameterFile() : CharmmParameterSet
• readStreamFile() : CharmmParameterSet
• readTopologyFile() : CharmmParameterSet
• registerAtomType() : ForceField
• registerGenerator() : ForceField
• registerPlatform() : Platform
• registerResidueTemplate() : ForceField
• registerScript() : ForceField
• reinitialize() : Context
• removeConstraint() : System
• removeForce() : System
• report() : CheckpointReporter , DCDReporter , PDBReporter , StateDataReporter
• residues() : Chain , Topology
• runForClockTime() : Simulation