Chain Class Reference

A Chain object represents a chain within a Topology. More...

Inheritance diagram for Chain:

Public Member Functions
def	__init__
	Construct a new Chain. More...
def	residues
	Iterate over all Residues in the Chain. More...
def	atoms
	Iterate over all Atoms in the Chain. More...
def	__len__

Public Attributes
	index
	The index of the Chain within its Topology. More...
	topology
	The Topology this Chain belongs to. More...
	id
	A user defined identifier for this Chain. More...

Detailed Description

A Chain object represents a chain within a Topology.

Constructor & Destructor Documentation

def __init__	(		self,
			index,
			topology,
			id
	)

Construct a new Chain.

You should call addChain() on the Topology instead of calling this directly.

Member Function Documentation

def __len__

(

self

)

References Chain._residues.

def atoms

(

self

)

Iterate over all Atoms in the Chain.

References Chain._residues.

Referenced by ForceField.registerScript().

def residues

(

self

)

Iterate over all Residues in the Chain.

References Chain._residues.

Member Data Documentation

id

A user defined identifier for this Chain.

index

The index of the Chain within its Topology.

Referenced by ForceField.registerScript().

topology

The Topology this Chain belongs to.

Referenced by DesmondDMSFile.getTopology().

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The documentation for this class was generated from the following file:

• topology.py