OpenMM
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Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 12345]
\Nsimtk
 \Nopenmm
  oNapp
  |oNamberinpcrdfile
  |oNamberprmtopfile
  |oNcharmmcrdfiles
  |oNcharmmparameterset
  |oNcharmmpsffile
  |oNcheckpointreporter
  |oNdcdfile
  |oNdcdreporter
  |oNdesmonddmsfile
  |oNelement
  |oNforcefield
  |oNgromacsgrofile
  |oNgromacstopfile
  |oNmodeller
  |oNpdbfile
  |oNpdbreporter
  |oNpdbxfile
  |oNsimulation
  |oNstatedatareporter
  |\Ntopology
  oNopenmm
  |oCStateA State object records a snapshot of the current state of a simulation at a point in time
  |oCIntegratorAn Integrator defines a method for simulating a System by integrating the equations of motion
  |oCDrudeLangevinIntegratorThis Integrator simulates systems that include Drude particles
  |oCForceForce objects apply forces to the particles in a System, or alter their behavior in other ways
  |oCCustomBondForceThis class implements bonded interactions between pairs of particles
  |oCAmoebaVdwForceThis class implements a buffered 14-7 potential used to model van der Waals forces
  |oCBrownianIntegratorThis is an Integrator which simulates a System using Brownian dynamics
  |oCCustomCompoundBondForceThis class supports a wide variety of bonded interactions
  |oCLangevinIntegratorThis is an Integrator which simulates a System using Langevin dynamics
  |oCAmoebaInPlaneAngleForceThis class implements an interaction at trigonal centers corresponding to the projected in-plane angle bend energy between four particles
  |oCCustomGBForceThis class implements complex, multiple stage nonbonded interactions between particles
  |oCAmoebaOutOfPlaneBendForceThis class implements the Amoeba out-of-plane bend interaction
  |oCNonbondedForceThis class implements nonbonded interactions between particles, including a Coulomb force to represent electrostatics and a Lennard-Jones force to represent van der Waals interactions
  |oCRBTorsionForceThis class implements an interaction between groups of four particles that varies with the torsion angle between them according to the Ryckaert-Bellemans potential
  |oCAmoebaBondForceThis class implements an interaction between pairs of particles that varies with the distance between them
  |oCVirtualSiteA VirtualSite describes the rules for computing a particle's position based on other particles
  |oCOutOfPlaneSiteThis is a VirtualSite that computes the particle location based on three other particles' locations
  |oCRPMDIntegratorThis is an Integrator which simulates a System using ring polymer molecular dynamics (RPMD)
  |oCXmlSerializerXmlSerializer is used for serializing objects as XML, and for reconstructing them again
  |oCCMMotionRemoverThis class prevents the center of mass of a System from drifting
  |oCAmoebaGeneralizedKirkwoodForceThis class implements an implicit solvation force using the generalized Kirkwood/Grycuk model
  |oCTabulatedFunctionA TabulatedFunction uses a set of tabulated values to define a mathematical function
  |oCDiscrete1DFunctionThis is a TabulatedFunction that computes a discrete one dimensional function f(x)
  |oCLocalCoordinatesSiteThis is a VirtualSite that uses the locations of three other particles to compute a local coordinate system, then places the virtual site at a fixed location in that coordinate system
  |oCCustomExternalForceThis class implements an "external" force on particles
  |oCDrudeForceThis class implements forces that are specific to Drude oscillators
  |oCDiscrete3DFunctionThis is a TabulatedFunction that computes a discrete three dimensional function f(x,y,z)
  |oCGBSAOBCForceThis class implements an implicit solvation force using the GBSA-OBC model
  |oCAmoebaAngleForceThis class implements an interaction between triplets of particles that varies with the angle between them
  |oCSystemThis class represents a molecular system
  |oCAmoebaWcaDispersionForceThis class implements a nonbonded interaction between pairs of particles typically used along with AmoebaGeneralizedKirkwoodForce as part of an implicit solvent model
  |oCContextA Context stores the complete state of a simulation
  |oCThreeParticleAverageSiteThis is a VirtualSite that computes the particle location as a weighted average of three other particle's locations
  |oCAndersenThermostatThis class uses the Andersen method to maintain constant temperature
  |oCMonteCarloMembraneBarostatThis is a Monte Carlo barostat designed specifically for membrane simulations
  |oCOpenMMExceptionThis class is used for all exceptions thrown by OpenMM
  |oCCustomManyParticleForceThis class supports a wide variety of nonbonded N-particle interactions, where N is user specified
  |oCVariableLangevinIntegratorThis is an error contolled, variable time step Integrator that simulates a System using Langevin dynamics
  |oCHarmonicBondForceThis class implements an interaction between pairs of particles that varies harmonically with the distance between them
  |oCVerletIntegratorThis is an Integrator which simulates a System using the leap-frog Verlet algorithm
  |oCMonteCarloAnisotropicBarostatThis class uses a Monte Carlo algorithm to adjust the size of the periodic box, simulating the effect of constant pressure
  |oCContinuous2DFunctionThis is a TabulatedFunction that computes a continuous two dimensional function
  |oCLocalEnergyMinimizerGiven a Context, this class searches for a new set of particle positions that represent a local minimum of the potential energy
  |oCCustomIntegratorThis is an Integrator that can be used to implemented arbitrary, user defined integration algorithms
  |oCDiscrete2DFunctionThis is a TabulatedFunction that computes a discrete two dimensional function f(x,y)
  |oCTwoParticleAverageSiteThis is a VirtualSite that computes the particle location as a weighted average of two other particle's locations
  |oCAmoebaStretchBendForceThis class implements the Amoeba stretch-bend interaction
  |oCGBVIForceThis class implements an implicit solvation force using the GB/VI model
  |oCCMAPTorsionForceThis class implements an interaction between pairs of dihedral angles
  |oCVariableVerletIntegratorThis is an error contolled, variable time step Integrator that simulates a System using the leap-frog Verlet algorithm
  |oCCustomTorsionForceThis class implements interactions between sets of four particles that depend on the torsion angle between them
  |oCPeriodicTorsionForceThis class implements an interaction between groups of four particles that varies periodically with the torsion angle between them
  |oCAmoebaPiTorsionForceThis class implements the Amoeba pi-torsion interaction
  |oCAmoebaMultipoleForceThis class implements the Amoeba multipole interaction
  |oCCustomHbondForceThis class supports a wide variety of energy functions used to represent hydrogen bonding
  |oCCustomNonbondedForceThis class implements nonbonded interactions between particles
  |oCHarmonicAngleForceThis class implements an interaction between groups of three particles that varies harmonically with the angle between them
  |oCDrudeSCFIntegratorThis is a leap-frog Verlet Integrator that simulates systems with Drude particles
  |oCMonteCarloBarostatThis class uses a Monte Carlo algorithm to adjust the size of the periodic box, simulating the effect of constant pressure
  |oCContinuous1DFunctionThis is a TabulatedFunction that computes a continuous one dimensional function
  |oCCustomAngleForceThis class implements interactions between sets of three particles that depend on the angle between them
  |oCPlatformA Platform defines an implementation of all the kernels needed to perform some calculation
  |oCContinuous3DFunctionThis is a TabulatedFunction that computes a continuous three dimensional function
  |\CAmoebaTorsionTorsionForceThis class implements the Amoeba torsion-torsion interaction
  oNvec3
  |\CVec3Vec3 is a 3-element tuple that supports many math operations
  \Nversion