OpenMM
|
This is an Integrator which simulates a System using Langevin dynamics. More...
Public Member Functions | |
def | getTemperature |
getTemperature(LangevinIntegrator self) -> double More... | |
def | setTemperature |
setTemperature(LangevinIntegrator self, double temp) More... | |
def | getFriction |
getFriction(LangevinIntegrator self) -> double More... | |
def | setFriction |
setFriction(LangevinIntegrator self, double coeff) More... | |
def | getRandomNumberSeed |
getRandomNumberSeed(LangevinIntegrator self) -> int More... | |
def | setRandomNumberSeed |
setRandomNumberSeed(LangevinIntegrator self, int seed) More... | |
def | step |
step(LangevinIntegrator self, int steps) More... | |
def | __init__ |
init(OpenMM::LangevinIntegrator self, double temperature, double frictionCoeff, double stepSize) -> LangevinIntegrator init(OpenMM::LangevinIntegrator self, LangevinIntegrator other) -> LangevinIntegrator More... | |
def | __del__ |
del(OpenMM::LangevinIntegrator self) More... | |
Public Member Functions inherited from Integrator | |
def | __init__ |
def | __del__ |
del(OpenMM::Integrator self) More... | |
def | getStepSize |
getStepSize(Integrator self) -> double More... | |
def | setStepSize |
setStepSize(Integrator self, double size) More... | |
def | getConstraintTolerance |
getConstraintTolerance(Integrator self) -> double More... | |
def | setConstraintTolerance |
setConstraintTolerance(Integrator self, double tol) More... | |
def | step |
step(Integrator self, int steps) More... | |
def | __getstate__ |
def | __setstate__ |
Public Attributes | |
this | |
Public Attributes inherited from Integrator | |
this | |
This is an Integrator which simulates a System using Langevin dynamics.
def __init__ | ( | self, | |
args | |||
) |
init(OpenMM::LangevinIntegrator self, double temperature, double frictionCoeff, double stepSize) -> LangevinIntegrator init(OpenMM::LangevinIntegrator self, LangevinIntegrator other) -> LangevinIntegrator
Create a LangevinIntegrator.
temperature | the temperature of the heat bath (in Kelvin) |
frictionCoeff | the friction coefficient which couples the system to the heat bath (in inverse picoseconds) |
stepSize | the step size with which to integrator the system (in picoseconds) |
References simtk.openmm.openmm.stripUnits().
def __del__ | ( | self | ) |
del(OpenMM::LangevinIntegrator self)
References simtk.openmm.openmm.stripUnits().
def getFriction | ( | self | ) |
getFriction(LangevinIntegrator self) -> double
Get the friction coefficient which determines how strongly the system is coupled to the heat bath (in inverse ps).
References simtk.openmm.openmm.stripUnits().
def getRandomNumberSeed | ( | self | ) |
getRandomNumberSeed(LangevinIntegrator self) -> int
Get the random number seed. See setRandomNumberSeed() for details.
References simtk.openmm.openmm.stripUnits().
def getTemperature | ( | self | ) |
getTemperature(LangevinIntegrator self) -> double
Get the temperature of the heat bath (in Kelvin).
References simtk.openmm.openmm.stripUnits().
def setFriction | ( | self, | |
args | |||
) |
setFriction(LangevinIntegrator self, double coeff)
Set the friction coefficient which determines how strongly the system is coupled to the heat bath (in inverse ps).
coeff | the friction coefficient, measured in 1/ps |
References simtk.openmm.openmm.stripUnits().
def setRandomNumberSeed | ( | self, | |
args | |||
) |
setRandomNumberSeed(LangevinIntegrator self, int seed)
Set the random number seed. The precise meaning of this parameter is undefined, and is left up to each Platform to interpret in an appropriate way. It is guaranteed that if two simulations are run with different random number seeds, the sequence of random forces will be different. On the other hand, no guarantees are made about the behavior of simulations that use the same seed. In particular, Platforms are permitted to use non-deterministic algorithms which produce different results on successive runs, even if those runs were initialized identically.
References simtk.openmm.openmm.stripUnits().
def setTemperature | ( | self, | |
args | |||
) |
setTemperature(LangevinIntegrator self, double temp)
Set the temperature of the heat bath (in Kelvin).
temp | the temperature of the heat bath, measured in Kelvin |
References simtk.openmm.openmm.stripUnits().
def step | ( | self, | |
args | |||
) |
step(LangevinIntegrator self, int steps)
Advance a simulation through time by taking a series of time steps.
steps | the number of time steps to take |
References simtk.openmm.openmm.stripUnits().
this |
Referenced by System.__init__().