OpenMM
 All Classes Namespaces Functions Variables Typedefs Enumerations Enumerator Friends Pages
AmoebaAngleForce.h
1 #ifndef OPENMM_AMOEBA_ANGLE_FORCE_H_
2 #define OPENMM_AMOEBA_ANGLE_FORCE_H_
3 
4 /* -------------------------------------------------------------------------- *
5  * OpenMMAmoeba *
6  * -------------------------------------------------------------------------- *
7  * This is part of the OpenMM molecular simulation toolkit originating from *
8  * Simbios, the NIH National Center for Physics-Based Simulation of *
9  * Biological Structures at Stanford, funded under the NIH Roadmap for *
10  * Medical Research, grant U54 GM072970. See https://simtk.org. *
11  * *
12  * Portions copyright (c) 2008-2012 Stanford University and the Authors. *
13  * Authors: Mark Friedrichs, Peter Eastman *
14  * Contributors: *
15  * *
16  * Permission is hereby granted, free of charge, to any person obtaining a *
17  * copy of this software and associated documentation files (the "Software"), *
18  * to deal in the Software without restriction, including without limitation *
19  * the rights to use, copy, modify, merge, publish, distribute, sublicense, *
20  * and/or sell copies of the Software, and to permit persons to whom the *
21  * Software is furnished to do so, subject to the following conditions: *
22  * *
23  * The above copyright notice and this permission notice shall be included in *
24  * all copies or substantial portions of the Software. *
25  * *
26  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
27  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
28  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
29  * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
30  * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
31  * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
32  * USE OR OTHER DEALINGS IN THE SOFTWARE. *
33  * -------------------------------------------------------------------------- */
34 
35 #include "openmm/Force.h"
36 #include "internal/windowsExportAmoeba.h"
37 #include <vector>
38 
39 namespace OpenMM {
40 
52 class OPENMM_EXPORT_AMOEBA AmoebaAngleForce : public Force {
53 
54 public:
55 
60 
64  int getNumAngles() const {
65  return angles.size();
66  }
67 
73  void setAmoebaGlobalAngleCubic(double cubicK);
74 
80  double getAmoebaGlobalAngleCubic() const;
81 
87  void setAmoebaGlobalAngleQuartic(double quarticK);
88 
94  double getAmoebaGlobalAngleQuartic() const;
95 
101  void setAmoebaGlobalAnglePentic(double penticK);
102 
108  double getAmoebaGlobalAnglePentic() const;
109 
115  void setAmoebaGlobalAngleSextic(double sexticK);
116 
122  double getAmoebaGlobalAngleSextic() const;
123 
134  int addAngle(int particle1, int particle2, int particle3, double length, double quadraticK);
135 
146  void getAngleParameters(int index, int& particle1, int& particle2, int& particle3, double& length, double& quadraticK) const;
147 
158  void setAngleParameters(int index, int particle1, int particle2, int particle3, double length, double quadraticK);
168  void updateParametersInContext(Context& context);
176  return false;
177  }
178 protected:
179  ForceImpl* createImpl() const;
180  double _globalCubicK, _globalQuarticK, _globalPenticK, _globalSexticK;
181 private:
182  class AngleInfo;
183  std::vector<AngleInfo> angles;
184 };
185 
190 class AmoebaAngleForce::AngleInfo {
191 public:
192  int particle1, particle2, particle3;
193  double length, quadraticK;
194  AngleInfo() {
195  particle1 = particle2 = particle3 = -1;
196  length = quadraticK = 0.0;
197  }
198  AngleInfo(int particle1, int particle2, int particle3, double length, double quadraticK) :
199  particle1(particle1), particle2(particle2), particle3(particle3), length(length), quadraticK(quadraticK) {
200  }
201 };
202 
203 } // namespace OpenMM
204 
205 #endif /*OPENMM_AMOEBA_ANGLE_FORCE_H_*/
double _globalSexticK
Definition: AmoebaAngleForce.h:180
A Context stores the complete state of a simulation.
Definition: Context.h:67
bool usesPeriodicBoundaryConditions() const
Returns whether or not this force makes use of periodic boundary conditions.
Definition: AmoebaAngleForce.h:175
Force objects apply forces to the particles in a System, or alter their behavior in other ways...
Definition: Force.h:65
int getNumAngles() const
Get the number of angle stretch terms in the potential function.
Definition: AmoebaAngleForce.h:64
This class implements an interaction between triplets of particles that varies with the angle between...
Definition: AmoebaAngleForce.h:52
Definition: AndersenThermostat.h:40