OpenMM
 All Classes Namespaces Functions Variables Typedefs Enumerations Enumerator Friends Pages
AmoebaOutOfPlaneBendForce.h
1 #ifndef OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_
2 #define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_
3 
4 /* -------------------------------------------------------------------------- *
5  * OpenMMAmoeba *
6  * -------------------------------------------------------------------------- *
7  * This is part of the OpenMM molecular simulation toolkit originating from *
8  * Simbios, the NIH National Center for Physics-Based Simulation of *
9  * Biological Structures at Stanford, funded under the NIH Roadmap for *
10  * Medical Research, grant U54 GM072970. See https://simtk.org. *
11  * *
12  * Portions copyright (c) 2008-2012 Stanford University and the Authors. *
13  * Authors: Mark Friedrichs, Peter Eastman *
14  * Contributors: *
15  * *
16  * Permission is hereby granted, free of charge, to any person obtaining a *
17  * copy of this software and associated documentation files (the "Software"), *
18  * to deal in the Software without restriction, including without limitation *
19  * the rights to use, copy, modify, merge, publish, distribute, sublicense, *
20  * and/or sell copies of the Software, and to permit persons to whom the *
21  * Software is furnished to do so, subject to the following conditions: *
22  * *
23  * The above copyright notice and this permission notice shall be included in *
24  * all copies or substantial portions of the Software. *
25  * *
26  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
27  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
28  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
29  * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
30  * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
31  * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
32  * USE OR OTHER DEALINGS IN THE SOFTWARE. *
33  * -------------------------------------------------------------------------- */
34 
35 #include "openmm/Force.h"
36 #include "internal/windowsExportAmoeba.h"
37 #include <vector>
38 
39 namespace OpenMM {
40 
49 class OPENMM_EXPORT_AMOEBA AmoebaOutOfPlaneBendForce : public Force {
50 
51 public:
52 
57 
61  int getNumOutOfPlaneBends() const {
62  return outOfPlaneBends.size();
63  }
64 
70  void setAmoebaGlobalOutOfPlaneBendCubic(double cubicK);
71 
77  double getAmoebaGlobalOutOfPlaneBendCubic(void) const;
78 
84  void setAmoebaGlobalOutOfPlaneBendQuartic(double quarticK);
85 
91  double getAmoebaGlobalOutOfPlaneBendQuartic(void) const;
92 
98  void setAmoebaGlobalOutOfPlaneBendPentic(double penticK);
99 
105  double getAmoebaGlobalOutOfPlaneBendPentic(void) const;
106 
112  void setAmoebaGlobalOutOfPlaneBendSextic(double sexticK);
113 
119  double getAmoebaGlobalOutOfPlaneBendSextic(void) const;
120 
131  int addOutOfPlaneBend(int particle1, int particle2, int particle3, int particle4, double k);
132 
143  void getOutOfPlaneBendParameters(int index, int& particle1, int& particle2, int& particle3, int& particle4, double& k) const;
144 
155  void setOutOfPlaneBendParameters(int index, int particle1, int particle2, int particle3, int particle4, double k);
165  void updateParametersInContext(Context& context);
173  return false;
174  }
175 protected:
176  ForceImpl* createImpl() const;
177  double _globalCubicK, _globalQuarticK, _globalPenticK, _globalSexticK;
178 private:
179  class OutOfPlaneBendInfo;
180  std::vector<OutOfPlaneBendInfo> outOfPlaneBends;
181 };
182 
187 class AmoebaOutOfPlaneBendForce::OutOfPlaneBendInfo {
188 public:
189  int particle1, particle2, particle3, particle4;
190  double k;
191  OutOfPlaneBendInfo() {
192  particle1 = particle2 = particle3 = particle4 = -1;
193  k = 0.0;
194  }
195  OutOfPlaneBendInfo(int particle1, int particle2, int particle3, int particle4,
196  double k) :
197  particle1(particle1), particle2(particle2), particle3(particle3), particle4(particle4), k(k) {
198 
199  }
200 };
201 
202 } // namespace OpenMM
203 
204 #endif /*OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_*/
A Context stores the complete state of a simulation.
Definition: Context.h:67
bool usesPeriodicBoundaryConditions() const
Returns whether or not this force makes use of periodic boundary conditions.
Definition: AmoebaOutOfPlaneBendForce.h:172
int getNumOutOfPlaneBends() const
Get the number of out-of-plane bend terms in the potential function.
Definition: AmoebaOutOfPlaneBendForce.h:61
Force objects apply forces to the particles in a System, or alter their behavior in other ways...
Definition: Force.h:65
This class implements the Amoeba out-of-plane bend interaction.
Definition: AmoebaOutOfPlaneBendForce.h:49
Definition: AndersenThermostat.h:40
double _globalSexticK
Definition: AmoebaOutOfPlaneBendForce.h:177