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HarmonicAngleForce.h
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#ifndef OPENMM_HARMONICANGLEFORCE_H_
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#define OPENMM_HARMONICANGLEFORCE_H_
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/* -------------------------------------------------------------------------- *
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* OpenMM *
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* -------------------------------------------------------------------------- *
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* This is part of the OpenMM molecular simulation toolkit originating from *
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* Simbios, the NIH National Center for Physics-Based Simulation of *
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* Biological Structures at Stanford, funded under the NIH Roadmap for *
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* Medical Research, grant U54 GM072970. See https://simtk.org. *
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* *
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* Portions copyright (c) 2008-2012 Stanford University and the Authors. *
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* Authors: Peter Eastman *
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* Contributors: *
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* *
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* Permission is hereby granted, free of charge, to any person obtaining a *
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* copy of this software and associated documentation files (the "Software"), *
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* to deal in the Software without restriction, including without limitation *
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* the rights to use, copy, modify, merge, publish, distribute, sublicense, *
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* and/or sell copies of the Software, and to permit persons to whom the *
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* Software is furnished to do so, subject to the following conditions: *
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* *
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* The above copyright notice and this permission notice shall be included in *
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* all copies or substantial portions of the Software. *
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* *
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* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
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* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
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* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
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* THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
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* DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
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* OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
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* USE OR OTHER DEALINGS IN THE SOFTWARE. *
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* -------------------------------------------------------------------------- */
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#include "Force.h"
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#include "Vec3.h"
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#include <map>
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#include <vector>
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#include "internal/windowsExport.h"
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namespace
OpenMM
{
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class
OPENMM_EXPORT
HarmonicAngleForce
:
public
Force
{
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public
:
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HarmonicAngleForce
();
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int
getNumAngles
()
const
{
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return
angles.size();
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}
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int
addAngle(
int
particle1,
int
particle2,
int
particle3,
double
angle,
double
k);
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void
getAngleParameters(
int
index,
int
& particle1,
int
& particle2,
int
& particle3,
double
& angle,
double
& k)
const
;
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void
setAngleParameters(
int
index,
int
particle1,
int
particle2,
int
particle3,
double
angle,
double
k);
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void
updateParametersInContext(
Context
& context);
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bool
usesPeriodicBoundaryConditions
()
const
{
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return
false
;
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}
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protected
:
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ForceImpl* createImpl()
const
;
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private
:
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class
AngleInfo;
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std::vector<AngleInfo> angles;
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};
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class
HarmonicAngleForce::AngleInfo {
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public
:
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int
particle1, particle2, particle3;
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double
angle, k;
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AngleInfo() {
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particle1 = particle2 = particle3 = -1;
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angle = k = 0.0;
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}
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AngleInfo(
int
particle1,
int
particle2,
int
particle3,
double
angle,
double
k) :
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particle1(particle1), particle2(particle2), particle3(particle3), angle(angle), k(k) {
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}
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};
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}
// namespace OpenMM
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#endif
/*OPENMM_HARMONICANGLEFORCE_H_*/
OpenMM::Context
A Context stores the complete state of a simulation.
Definition:
Context.h:67
OpenMM::Force
Force objects apply forces to the particles in a System, or alter their behavior in other ways...
Definition:
Force.h:65
OpenMM::HarmonicAngleForce
This class implements an interaction between groups of three particles that varies harmonically with ...
Definition:
HarmonicAngleForce.h:50
OpenMM::HarmonicAngleForce::usesPeriodicBoundaryConditions
bool usesPeriodicBoundaryConditions() const
Returns whether or not this force makes use of periodic boundary conditions.
Definition:
HarmonicAngleForce.h:111
OpenMM
Definition:
AndersenThermostat.h:40
OpenMM::HarmonicAngleForce::getNumAngles
int getNumAngles() const
Get the number of harmonic bond angle terms in the potential function.
Definition:
HarmonicAngleForce.h:59
openmm
openmmapi
include
openmm
HarmonicAngleForce.h
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