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PeriodicTorsionForce.h
1 #ifndef OPENMM_PERIODICTORSIONFORCE_H_
2 #define OPENMM_PERIODICTORSIONFORCE_H_
3 
4 /* -------------------------------------------------------------------------- *
5  * OpenMM *
6  * -------------------------------------------------------------------------- *
7  * This is part of the OpenMM molecular simulation toolkit originating from *
8  * Simbios, the NIH National Center for Physics-Based Simulation of *
9  * Biological Structures at Stanford, funded under the NIH Roadmap for *
10  * Medical Research, grant U54 GM072970. See https://simtk.org. *
11  * *
12  * Portions copyright (c) 2008-2012 Stanford University and the Authors. *
13  * Authors: Peter Eastman *
14  * Contributors: *
15  * *
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23  * The above copyright notice and this permission notice shall be included in *
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34 
35 #include "Force.h"
36 #include "Vec3.h"
37 #include <map>
38 #include <vector>
39 #include "internal/windowsExport.h"
40 
41 namespace OpenMM {
42 
50 class OPENMM_EXPORT PeriodicTorsionForce : public Force {
51 public:
59  int getNumTorsions() const {
60  return periodicTorsions.size();
61  }
74  int addTorsion(int particle1, int particle2, int particle3, int particle4, int periodicity, double phase, double k);
87  void getTorsionParameters(int index, int& particle1, int& particle2, int& particle3, int& particle4, int& periodicity, double& phase, double& k) const;
100  void setTorsionParameters(int index, int particle1, int particle2, int particle3, int particle4, int periodicity, double phase, double k);
110  void updateParametersInContext(Context& context);
118  return false;
119  }
120 protected:
121  ForceImpl* createImpl() const;
122 private:
123  class PeriodicTorsionInfo;
124  std::vector<PeriodicTorsionInfo> periodicTorsions;
125 };
126 
131 class PeriodicTorsionForce::PeriodicTorsionInfo {
132 public:
133  int particle1, particle2, particle3, particle4, periodicity;
134  double phase, k;
135  PeriodicTorsionInfo() {
136  particle1 = particle2 = particle3 = particle4 = -1;
137  periodicity = 1;
138  phase = k = 0.0;
139  }
140  PeriodicTorsionInfo(int particle1, int particle2, int particle3, int particle4, int periodicity, double phase, double k) :
141  particle1(particle1), particle2(particle2), particle3(particle3), particle4(particle4), periodicity(periodicity), phase(phase), k(k) {
142  }
143 };
144 
145 } // namespace OpenMM
146 
147 #endif /*OPENMM_PERIODICTORSIONFORCE_H_*/
int getNumTorsions() const
Get the number of periodic torsion terms in the potential function.
Definition: PeriodicTorsionForce.h:59
A Context stores the complete state of a simulation.
Definition: Context.h:67
Force objects apply forces to the particles in a System, or alter their behavior in other ways...
Definition: Force.h:65
This class implements an interaction between groups of four particles that varies periodically with t...
Definition: PeriodicTorsionForce.h:50
bool usesPeriodicBoundaryConditions() const
Returns whether or not this force makes use of periodic boundary conditions.
Definition: PeriodicTorsionForce.h:117
Definition: AndersenThermostat.h:40