- g -
- getAcceptorParameters()
: CustomHbondForce
- getAEwald()
: AmoebaMultipoleForce
- getAmoebaGlobalAngleCubic()
: AmoebaAngleForce
- getAmoebaGlobalAnglePentic()
: AmoebaAngleForce
- getAmoebaGlobalAngleQuartic()
: AmoebaAngleForce
- getAmoebaGlobalAngleSextic()
: AmoebaAngleForce
- getAmoebaGlobalBondCubic()
: AmoebaBondForce
- getAmoebaGlobalBondQuartic()
: AmoebaBondForce
- getAmoebaGlobalInPlaneAngleCubic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAnglePentic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleQuartic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleSextic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalOutOfPlaneBendCubic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendPentic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendQuartic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendSextic()
: AmoebaOutOfPlaneBendForce
- getAngleParameters()
: AmoebaAngleForce
, AmoebaInPlaneAngleForce
, CustomAngleForce
, HarmonicAngleForce
- getApplyThermostat()
: RPMDIntegrator
- getAwater()
: AmoebaWcaDispersionForce
- getBondParameters()
: AmoebaBondForce
, CustomBondForce
, CustomCompoundBondForce
, GBVIForce
, HarmonicBondForce
- getBornRadiusScalingMethod()
: GBVIForce
- getBoxVectors()
: AmberInpcrdFile
- getByAtomicNumber()
: Element
- getByMass()
: Element
- getBySymbol()
: Element
- getComputationStep()
: CustomIntegrator
- getComputedValueParameters()
: CustomGBForce
- getConstraintParameters()
: System
- getConstraintTolerance()
: Integrator
- getContractions()
: RPMDIntegrator
- getCovalentMap()
: AmoebaMultipoleForce
- getCovalentMaps()
: AmoebaMultipoleForce
- getCutoff()
: AmoebaVdwForce
- getCutoffDistance()
: AmoebaMultipoleForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- getDefaultCollisionFrequency()
: AndersenThermostat
- getDefaultPeriodicBoxVectors()
: System
- getDefaultPluginsDirectory()
: Platform
- getDefaultPressure()
: MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
- getDefaultSurfaceTension()
: MonteCarloMembraneBarostat
- getDefaultTemperature()
: AndersenThermostat
- getDispoff()
: AmoebaWcaDispersionForce
- getDonorParameters()
: CustomHbondForce
- getDrudeFriction()
: DrudeLangevinIntegrator
- getDrudeTemperature()
: DrudeLangevinIntegrator
- getElectrostaticPotential()
: AmoebaMultipoleForce
- getEnergyFunction()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getEnergyTermParameters()
: CustomGBForce
- getEpsh()
: AmoebaWcaDispersionForce
- getEpsilonCombiningRule()
: AmoebaVdwForce
- getEpso()
: AmoebaWcaDispersionForce
- getErrorTolerance()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- getEwaldErrorTolerance()
: AmoebaMultipoleForce
, NonbondedForce
- getExceptionParameters()
: NonbondedForce
- getExclusionParticles()
: CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getForce()
: System
- getForceGroup()
: Force
- getForces()
: State
, System
- getFrequency()
: CMMotionRemover
, MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
- getFriction()
: BrownianIntegrator
, DrudeLangevinIntegrator
, LangevinIntegrator
, RPMDIntegrator
, VariableLangevinIntegrator
- getFunctionParameters()
: Continuous1DFunction
, Continuous2DFunction
, Continuous3DFunction
, CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, Discrete1DFunction
, Discrete2DFunction
, Discrete3DFunction
- getGenerators()
: ForceField
- getGlobalParameterDefaultValue()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalParameterName()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalVariable()
: CustomIntegrator
- getGlobalVariableByName()
: CustomIntegrator
- getGlobalVariableName()
: CustomIntegrator
- getIncludeCavityTerm()
: AmoebaGeneralizedKirkwoodForce
- getInducedDipoles()
: AmoebaMultipoleForce
- getIntegrator()
: Context
- getInteractionGroupParameters()
: CustomNonbondedForce
- getKineticEnergy()
: State
- getKineticEnergyExpression()
: CustomIntegrator
- getLocalPosition()
: LocalCoordinatesSite
- getMapParameters()
: CMAPTorsionForce
- getMinimizationErrorTolerance()
: DrudeSCFIntegrator
- getMolecules()
: Context
- getMultipoleParameters()
: AmoebaMultipoleForce
- getMutualInducedMaxIterations()
: AmoebaMultipoleForce
- getMutualInducedTargetEpsilon()
: AmoebaMultipoleForce
- getName()
: Platform
- getNonbondedMethod()
: AmoebaMultipoleForce
, AmoebaVdwForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- getNumAcceptors()
: CustomHbondForce
- getNumAngles()
: AmoebaAngleForce
, AmoebaInPlaneAngleForce
, CustomAngleForce
, HarmonicAngleForce
- getNumBonds()
: AmoebaBondForce
, CustomBondForce
, CustomCompoundBondForce
, GBVIForce
, HarmonicBondForce
- getNumComputations()
: CustomIntegrator
- getNumComputedValues()
: CustomGBForce
- getNumConstraints()
: System
- getNumCopies()
: RPMDIntegrator
- getNumDonors()
: CustomHbondForce
- getNumEnergyTerms()
: CustomGBForce
- getNumExceptions()
: NonbondedForce
- getNumExclusions()
: CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getNumForces()
: System
- getNumFrames()
: GromacsGroFile
, PDBFile
, PDBxFile
- getNumFunctions()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getNumGlobalParameters()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getNumGlobalVariables()
: CustomIntegrator
- getNumInteractionGroups()
: CustomNonbondedForce
- getNumMaps()
: CMAPTorsionForce
- getNumMultipoles()
: AmoebaMultipoleForce
- getNumOutOfPlaneBends()
: AmoebaOutOfPlaneBendForce
- getNumParticles()
: AmoebaGeneralizedKirkwoodForce
, AmoebaVdwForce
, AmoebaWcaDispersionForce
, CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
, DrudeForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
, System
, VirtualSite
- getNumParticlesPerBond()
: CustomCompoundBondForce
- getNumParticlesPerSet()
: CustomManyParticleForce
- getNumPerAcceptorParameters()
: CustomHbondForce
- getNumPerAngleParameters()
: CustomAngleForce
- getNumPerBondParameters()
: CustomBondForce
, CustomCompoundBondForce
- getNumPerDofVariables()
: CustomIntegrator
- getNumPerDonorParameters()
: CustomHbondForce
- getNumPerParticleParameters()
: CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
- getNumPerTorsionParameters()
: CustomTorsionForce
- getNumPiTorsions()
: AmoebaPiTorsionForce
- getNumPlatforms()
: Platform
- getNumScreenedPairs()
: DrudeForce
- getNumStretchBends()
: AmoebaStretchBendForce
- getNumTabulatedFunctions()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getNumTorsions()
: CMAPTorsionForce
, CustomTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
- getNumTorsionTorsionGrids()
: AmoebaTorsionTorsionForce
- getNumTorsionTorsions()
: AmoebaTorsionTorsionForce
- getOpenMMVersion()
: Platform
- getOriginWeights()
: LocalCoordinatesSite
- getOutOfPlaneBendParameters()
: AmoebaOutOfPlaneBendForce
- getParameter()
: Context
- getParameters()
: State
- getParticle()
: VirtualSite
- getParticleExclusions()
: AmoebaVdwForce
- getParticleMass()
: System
- getParticleParameters()
: AmoebaGeneralizedKirkwoodForce
, AmoebaVdwForce
, AmoebaWcaDispersionForce
, CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
, DrudeForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- getPerAcceptorParameterName()
: CustomHbondForce
- getPerAngleParameterName()
: CustomAngleForce
- getPerBondParameterName()
: CustomBondForce
, CustomCompoundBondForce
- getPerDofVariable()
: CustomIntegrator
- getPerDofVariableByName()
: CustomIntegrator
- getPerDofVariableName()
: CustomIntegrator
- getPerDonorParameterName()
: CustomHbondForce
- getPeriodicBoxVectors()
: State
- getPeriodicBoxVolume()
: State
- getPermutationMode()
: CustomManyParticleForce
- getPerParticleParameterName()
: CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
- getPerTorsionParameterName()
: CustomTorsionForce
- getPiTorsionParameters()
: AmoebaPiTorsionForce
- getPlatform()
: Context
, Platform
- getPlatformByName()
: Platform
- getPmeBSplineOrder()
: AmoebaMultipoleForce
- getPmeGridDimensions()
: AmoebaMultipoleForce
- getPMEParameters()
: NonbondedForce
- getPolarizationType()
: AmoebaMultipoleForce
- getPositions()
: AmberInpcrdFile
, DesmondDMSFile
, GromacsGroFile
, Modeller
, PDBFile
, PDBxFile
, State
- getPotentialEnergy()
: State
- getProbeRadius()
: AmoebaGeneralizedKirkwoodForce
- getPropertyDefaultValue()
: Platform
- getPropertyNames()
: Platform
- getPropertyValue()
: Platform
- getProvenance()
: DesmondDMSFile
- getQuinticLowerLimitFactor()
: GBVIForce
- getQuinticUpperBornRadiusLimit()
: GBVIForce
- getRandomNumberSeed()
: AndersenThermostat
, BrownianIntegrator
, CustomIntegrator
, DrudeLangevinIntegrator
, LangevinIntegrator
, MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
, RPMDIntegrator
, VariableLangevinIntegrator
- getReactionFieldDielectric()
: NonbondedForce
- getReciprocalSpaceForceGroup()
: NonbondedForce
- getRminh()
: AmoebaWcaDispersionForce
- getRmino()
: AmoebaWcaDispersionForce
- getScaleX()
: MonteCarloAnisotropicBarostat
- getScaleY()
: MonteCarloAnisotropicBarostat
- getScaleZ()
: MonteCarloAnisotropicBarostat
- getScreenedPairParameters()
: DrudeForce
- getShctd()
: AmoebaWcaDispersionForce
- getSigmaCombiningRule()
: AmoebaVdwForce
- getSlevy()
: AmoebaWcaDispersionForce
- getSoluteDielectric()
: AmoebaGeneralizedKirkwoodForce
, GBSAOBCForce
, GBVIForce
- getSolventDielectric()
: AmoebaGeneralizedKirkwoodForce
, GBSAOBCForce
, GBVIForce
- getSpeed()
: Platform
- getState()
: Context
, RPMDIntegrator
- getStepSize()
: Integrator
- getStretchBendParameters()
: AmoebaStretchBendForce
- getSurfaceAreaEnergy()
: GBSAOBCForce
- getSurfaceAreaFactor()
: AmoebaGeneralizedKirkwoodForce
- getSwitchingDistance()
: CustomNonbondedForce
, NonbondedForce
- getSystem()
: Context
- getSystemMultipoleMoments()
: AmoebaMultipoleForce
- getTabulatedFunction()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getTabulatedFunctionName()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getTemperature()
: BrownianIntegrator
, DrudeLangevinIntegrator
, LangevinIntegrator
, MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
, RPMDIntegrator
, VariableLangevinIntegrator
- getTime()
: State
- getTopology()
: DesmondDMSFile
, Modeller
, PDBFile
, PDBxFile
- getTorsionParameters()
: CMAPTorsionForce
, CustomTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
- getTorsionTorsionGrid()
: AmoebaTorsionTorsionForce
- getTorsionTorsionParameters()
: AmoebaTorsionTorsionForce
- getTotalEnergy()
: RPMDIntegrator
- getTypeFilter()
: CustomManyParticleForce
- getUnitCellDimensions()
: GromacsGroFile
, Topology
- getUseDispersionCorrection()
: AmoebaVdwForce
, NonbondedForce
- getUseLongRangeCorrection()
: CustomNonbondedForce
- getUseSwitchingFunction()
: CustomNonbondedForce
, NonbondedForce
- getVelocities()
: AmberInpcrdFile
, State
- getVirtualSite()
: System
- getWeight()
: ThreeParticleAverageSite
, TwoParticleAverageSite
- getWeight12()
: OutOfPlaneSite
- getWeight13()
: OutOfPlaneSite
- getWeightCross()
: OutOfPlaneSite
- getXWeights()
: LocalCoordinatesSite
- getXYMode()
: MonteCarloMembraneBarostat
- getYWeights()
: LocalCoordinatesSite
- getZMode()
: MonteCarloMembraneBarostat