OpenMM
|
| CheckpointReporter (simtk.openmm.app.checkpointreporter) | DrudeLangevinIntegrator (simtk.openmm.openmm) | LocalCoordinatesSite (simtk.openmm.openmm) | Residue (simtk.openmm.app.topology) | ||
CMAPTorsionForce (simtk.openmm.openmm) | DrudeSCFIntegrator (simtk.openmm.openmm) | LocalEnergyMinimizer (simtk.openmm.openmm) | RPMDIntegrator (simtk.openmm.openmm) | |||
AllBonds (simtk.openmm.app.forcefield) | CMMotionRemover (simtk.openmm.openmm) | DualAMDIntegrator (simtk.openmm.amd) |
| RPMDMonteCarloBarostat (simtk.openmm.openmm) | ||
AmberInpcrdFile (simtk.openmm.app.amberinpcrdfile) | CompoundIntegrator (simtk.openmm.openmm) |
|
| |||
AmberPrmtopFile (simtk.openmm.app.amberprmtopfile) | Context (simtk.openmm.openmm) | Modeller (simtk.openmm.app.modeller) | ||||
AMDForceGroupIntegrator (simtk.openmm.amd) | Continuous1DFunction (simtk.openmm.openmm) | Element (simtk.openmm.app.element) | MonteCarloAnisotropicBarostat (simtk.openmm.openmm) | Simulation (simtk.openmm.app.simulation) | ||
AMDIntegrator (simtk.openmm.amd) | Continuous2DFunction (simtk.openmm.openmm) | Ewald (simtk.openmm.app.forcefield) | MonteCarloBarostat (simtk.openmm.openmm) | State (simtk.openmm.openmm) | ||
AmoebaAngleForce (simtk.openmm.openmm) | Continuous3DFunction (simtk.openmm.openmm) |
| MonteCarloMembraneBarostat (simtk.openmm.openmm) | StateDataReporter (simtk.openmm.app.statedatareporter) | ||
AmoebaBondForce (simtk.openmm.openmm) | CustomAngleForce (simtk.openmm.openmm) | MTSIntegrator (simtk.openmm.mtsintegrator) | System (simtk.openmm.openmm) | |||
AmoebaGeneralizedKirkwoodForce (simtk.openmm.openmm) | CustomBondForce (simtk.openmm.openmm) | Force (simtk.openmm.openmm) |
|
| ||
AmoebaInPlaneAngleForce (simtk.openmm.openmm) | CustomCentroidBondForce (simtk.openmm.openmm) | ForceField (simtk.openmm.app.forcefield) | ||||
AmoebaMultipoleForce (simtk.openmm.openmm) | CustomCompoundBondForce (simtk.openmm.openmm) |
| NoCutoff (simtk.openmm.app.forcefield) | TabulatedFunction (simtk.openmm.openmm) | ||
AmoebaOutOfPlaneBendForce (simtk.openmm.openmm) | CustomExternalForce (simtk.openmm.openmm) | NonbondedForce (simtk.openmm.openmm) | ThreeParticleAverageSite (simtk.openmm.openmm) | |||
AmoebaPiTorsionForce (simtk.openmm.openmm) | CustomGBForce (simtk.openmm.openmm) | GBn (simtk.openmm.app.amberprmtopfile) |
| Topology (simtk.openmm.app.topology) | ||
AmoebaStretchBendForce (simtk.openmm.openmm) | CustomHbondForce (simtk.openmm.openmm) | GBn2 (simtk.openmm.app.amberprmtopfile) | TwoParticleAverageSite (simtk.openmm.openmm) | |||
AmoebaTorsionTorsionForce (simtk.openmm.openmm) | CustomIntegrator (simtk.openmm.openmm) | GBSAOBCForce (simtk.openmm.openmm) | OBC1 (simtk.openmm.app.amberprmtopfile) |
| ||
AmoebaVdwForce (simtk.openmm.openmm) | CustomManyParticleForce (simtk.openmm.openmm) | GromacsGroFile (simtk.openmm.app.gromacsgrofile) | OBC2 (simtk.openmm.app.amberprmtopfile) | |||
AmoebaWcaDispersionForce (simtk.openmm.openmm) | CustomNonbondedForce (simtk.openmm.openmm) | GromacsTopFile (simtk.openmm.app.gromacstopfile) | OpenMMException (simtk.openmm.openmm) | VariableLangevinIntegrator (simtk.openmm.openmm) | ||
AndersenThermostat (simtk.openmm.openmm) | CustomTorsionForce (simtk.openmm.openmm) |
| OutOfPlaneSite (simtk.openmm.openmm) | VariableVerletIntegrator (simtk.openmm.openmm) | ||
Atom (simtk.openmm.app.topology) | CutoffNonPeriodic (simtk.openmm.app.forcefield) |
| Vec3 (simtk.openmm.vec3) | |||
| CutoffPeriodic (simtk.openmm.app.forcefield) | HAngles (simtk.openmm.app.forcefield) | VerletIntegrator (simtk.openmm.openmm) | |||
| HarmonicAngleForce (simtk.openmm.openmm) | PDBFile (simtk.openmm.app.pdbfile) | VirtualSite (simtk.openmm.openmm) | |||
BrownianIntegrator (simtk.openmm.openmm) | HarmonicBondForce (simtk.openmm.openmm) | PDBReporter (simtk.openmm.app.pdbreporter) |
| |||
| DCDFile (simtk.openmm.app.dcdfile) | HBonds (simtk.openmm.app.forcefield) | PDBxFile (simtk.openmm.app.pdbxfile) | |||
DCDReporter (simtk.openmm.app.dcdreporter) | HCT (simtk.openmm.app.amberprmtopfile) | PDBxReporter (simtk.openmm.app.pdbreporter) | XmlSerializer (simtk.openmm.openmm) | |||
Chain (simtk.openmm.app.topology) | DesmondDMSFile (simtk.openmm.app.desmonddmsfile) |
| PeriodicTorsionForce (simtk.openmm.openmm) | |||
CharmmCrdFile (simtk.openmm.app.charmmcrdfiles) | Discrete1DFunction (simtk.openmm.openmm) | Platform (simtk.openmm.openmm) | ||||
CharmmParameterSet (simtk.openmm.app.charmmparameterset) | Discrete2DFunction (simtk.openmm.openmm) | Integrator (simtk.openmm.openmm) | PME (simtk.openmm.app.forcefield) | |||
CharmmPsfFile (simtk.openmm.app.charmmpsffile) | Discrete3DFunction (simtk.openmm.openmm) |
|
| |||
CharmmRstFile (simtk.openmm.app.charmmcrdfiles) | DrudeForce (simtk.openmm.openmm) | |||||
LangevinIntegrator (simtk.openmm.openmm) | RBTorsionForce (simtk.openmm.openmm) | |||||