| CheckpointReporter (simtk.openmm.app.checkpointreporter) | DrudeLangevinIntegrator (simtk.openmm.openmm) | LocalCoordinatesSite (simtk.openmm.openmm) | Residue (simtk.openmm.app.topology) |
CMAPTorsionForce (simtk.openmm.openmm) | DrudeSCFIntegrator (simtk.openmm.openmm) | LocalEnergyMinimizer (simtk.openmm.openmm) | RPMDIntegrator (simtk.openmm.openmm) |
AllBonds (simtk.openmm.app.forcefield) | CMMotionRemover (simtk.openmm.openmm) | DualAMDIntegrator (simtk.openmm.amd) |
| RPMDMonteCarloBarostat (simtk.openmm.openmm) |
AmberInpcrdFile (simtk.openmm.app.amberinpcrdfile) | CompoundIntegrator (simtk.openmm.openmm) |
|
|
AmberPrmtopFile (simtk.openmm.app.amberprmtopfile) | Context (simtk.openmm.openmm) | Modeller (simtk.openmm.app.modeller) |
AMDForceGroupIntegrator (simtk.openmm.amd) | Continuous1DFunction (simtk.openmm.openmm) | Element (simtk.openmm.app.element) | MonteCarloAnisotropicBarostat (simtk.openmm.openmm) | Simulation (simtk.openmm.app.simulation) |
AMDIntegrator (simtk.openmm.amd) | Continuous2DFunction (simtk.openmm.openmm) | Ewald (simtk.openmm.app.forcefield) | MonteCarloBarostat (simtk.openmm.openmm) | State (simtk.openmm.openmm) |
AmoebaAngleForce (simtk.openmm.openmm) | Continuous3DFunction (simtk.openmm.openmm) |
| MonteCarloMembraneBarostat (simtk.openmm.openmm) | StateDataReporter (simtk.openmm.app.statedatareporter) |
AmoebaBondForce (simtk.openmm.openmm) | CustomAngleForce (simtk.openmm.openmm) | MTSIntegrator (simtk.openmm.mtsintegrator) | System (simtk.openmm.openmm) |
AmoebaGeneralizedKirkwoodForce (simtk.openmm.openmm) | CustomBondForce (simtk.openmm.openmm) | Force (simtk.openmm.openmm) |
|
|
AmoebaInPlaneAngleForce (simtk.openmm.openmm) | CustomCentroidBondForce (simtk.openmm.openmm) | ForceField (simtk.openmm.app.forcefield) |
AmoebaMultipoleForce (simtk.openmm.openmm) | CustomCompoundBondForce (simtk.openmm.openmm) |
| NoCutoff (simtk.openmm.app.forcefield) | TabulatedFunction (simtk.openmm.openmm) |
AmoebaOutOfPlaneBendForce (simtk.openmm.openmm) | CustomExternalForce (simtk.openmm.openmm) | NonbondedForce (simtk.openmm.openmm) | ThreeParticleAverageSite (simtk.openmm.openmm) |
AmoebaPiTorsionForce (simtk.openmm.openmm) | CustomGBForce (simtk.openmm.openmm) | GBn (simtk.openmm.app.amberprmtopfile) |
| Topology (simtk.openmm.app.topology) |
AmoebaStretchBendForce (simtk.openmm.openmm) | CustomHbondForce (simtk.openmm.openmm) | GBn2 (simtk.openmm.app.amberprmtopfile) | TwoParticleAverageSite (simtk.openmm.openmm) |
AmoebaTorsionTorsionForce (simtk.openmm.openmm) | CustomIntegrator (simtk.openmm.openmm) | GBSAOBCForce (simtk.openmm.openmm) | OBC1 (simtk.openmm.app.amberprmtopfile) |
|
AmoebaVdwForce (simtk.openmm.openmm) | CustomManyParticleForce (simtk.openmm.openmm) | GromacsGroFile (simtk.openmm.app.gromacsgrofile) | OBC2 (simtk.openmm.app.amberprmtopfile) |
AmoebaWcaDispersionForce (simtk.openmm.openmm) | CustomNonbondedForce (simtk.openmm.openmm) | GromacsTopFile (simtk.openmm.app.gromacstopfile) | OpenMMException (simtk.openmm.openmm) | VariableLangevinIntegrator (simtk.openmm.openmm) |
AndersenThermostat (simtk.openmm.openmm) | CustomTorsionForce (simtk.openmm.openmm) |
| OutOfPlaneSite (simtk.openmm.openmm) | VariableVerletIntegrator (simtk.openmm.openmm) |
Atom (simtk.openmm.app.topology) | CutoffNonPeriodic (simtk.openmm.app.forcefield) |
| Vec3 (simtk.openmm.vec3) |
| CutoffPeriodic (simtk.openmm.app.forcefield) | HAngles (simtk.openmm.app.forcefield) | VerletIntegrator (simtk.openmm.openmm) |
| HarmonicAngleForce (simtk.openmm.openmm) | PDBFile (simtk.openmm.app.pdbfile) | VirtualSite (simtk.openmm.openmm) |
BrownianIntegrator (simtk.openmm.openmm) | HarmonicBondForce (simtk.openmm.openmm) | PDBReporter (simtk.openmm.app.pdbreporter) |
|
| DCDFile (simtk.openmm.app.dcdfile) | HBonds (simtk.openmm.app.forcefield) | PDBxFile (simtk.openmm.app.pdbxfile) |
DCDReporter (simtk.openmm.app.dcdreporter) | HCT (simtk.openmm.app.amberprmtopfile) | PDBxReporter (simtk.openmm.app.pdbreporter) | XmlSerializer (simtk.openmm.openmm) |
Chain (simtk.openmm.app.topology) | DesmondDMSFile (simtk.openmm.app.desmonddmsfile) |
| PeriodicTorsionForce (simtk.openmm.openmm) | |
CharmmCrdFile (simtk.openmm.app.charmmcrdfiles) | Discrete1DFunction (simtk.openmm.openmm) | Platform (simtk.openmm.openmm) | |
CharmmParameterSet (simtk.openmm.app.charmmparameterset) | Discrete2DFunction (simtk.openmm.openmm) | Integrator (simtk.openmm.openmm) | PME (simtk.openmm.app.forcefield) | |
CharmmPsfFile (simtk.openmm.app.charmmpsffile) | Discrete3DFunction (simtk.openmm.openmm) |
|
| |
CharmmRstFile (simtk.openmm.app.charmmcrdfiles) | DrudeForce (simtk.openmm.openmm) | |
| | LangevinIntegrator (simtk.openmm.openmm) | RBTorsionForce (simtk.openmm.openmm) | |
| | | | |