- _ -
- __add__()
: Vec3
- __copy__()
: Force
, System
, Integrator
- __deepcopy__()
: Vec3
, Force
, Integrator
, System
- __del__()
: CheckpointReporter
, DCDReporter
, DesmondDMSFile
, PDBReporter
, PDBxReporter
, StateDataReporter
- __div__()
: Vec3
- __getnewargs__()
: Vec3
- __getstate__()
: State
, Force
, Integrator
, System
- __init__()
: AmoebaOutOfPlaneBendForce
, DrudeLangevinIntegrator
, DrudeSCFIntegrator
, AmoebaPiTorsionForce
, GBSAOBCForce
, HarmonicAngleForce
, AmoebaStretchBendForce
, HarmonicBondForce
, LangevinIntegrator
, AmoebaTorsionTorsionForce
, VirtualSite
, LocalCoordinatesSite
, Atom
, AmoebaVdwForce
, LocalEnergyMinimizer
, Topology
, StateDataReporter
, Simulation
, PDBxFile
, PDBReporter
, PDBFile
, Modeller
, MonteCarloAnisotropicBarostat
, GromacsGroFile
, ForceField
, Element
, DesmondDMSFile
, DCDReporter
, DCDFile
, AmoebaWcaDispersionForce
, MonteCarloBarostat
, CharmmParameterSet
, CharmmRstFile
, CharmmCrdFile
, AmberPrmtopFile
, AmberInpcrdFile
, XmlSerializer
, VerletIntegrator
, MonteCarloMembraneBarostat
, VariableLangevinIntegrator
, TwoParticleAverageSite
, ThreeParticleAverageSite
, System
, RPMDMonteCarloBarostat
, RPMDIntegrator
, AndersenThermostat
, NonbondedForce
, OpenMMException
, Integrator
, OutOfPlaneSite
, PeriodicTorsionForce
, BrownianIntegrator
, Platform
, RBTorsionForce
, CMAPTorsionForce
, AMDIntegrator
, CMMotionRemover
, CompoundIntegrator
, AMDForceGroupIntegrator
, Context
, VariableVerletIntegrator
, TabulatedFunction
, DualAMDIntegrator
, DrudeForce
, Discrete3DFunction
, Discrete2DFunction
, Continuous1DFunction
, CustomTorsionForce
, CustomNonbondedForce
, CustomManyParticleForce
, Residue
, CustomHbondForce
, CustomGBForce
, CustomExternalForce
, GromacsTopFile
, CustomCentroidBondForce
, CustomBondForce
, CustomAngleForce
, Continuous2DFunction
, MTSIntegrator
, Continuous3DFunction
, CharmmPsfFile
, CheckpointReporter
, State
, Force
, CustomCompoundBondForce
, AmoebaAngleForce
, AmoebaBondForce
, CustomIntegrator
, Chain
, AmoebaGeneralizedKirkwoodForce
, AmoebaInPlaneAngleForce
, Discrete1DFunction
, AmoebaMultipoleForce
- __len__()
: Residue
, Chain
- __mul__()
: Vec3
- __new__()
: Vec3
- __radd__()
: Vec3
- __repr__()
: GBn2
, Ewald
, AllBonds
, HAngles
, PME
, Residue
, HBonds
, Topology
, HCT
, Atom
, CutoffPeriodic
, GBn
, OBC2
, Chain
, OBC1
, CutoffNonPeriodic
, NoCutoff
, Element
- __rmul__()
: Vec3
- __rsub__()
: Vec3
- __setstate__()
: State
, Integrator
, Force
, System
- __str__()
: Element
- __sub__()
: Vec3