Here is a list of all class members with links to the classes they belong to:
- g -
- GB_FORCE_GROUP
: CharmmPsfFile
- getAcceptorParameters()
: CustomHbondForce
- getAEwald()
: AmoebaMultipoleForce
- getAlpha()
: AMDIntegrator
- getAlphaGroup()
: AMDForceGroupIntegrator
, DualAMDIntegrator
- getAlphaTotal()
: DualAMDIntegrator
- getAmoebaGlobalAngleCubic()
: AmoebaAngleForce
- getAmoebaGlobalAnglePentic()
: AmoebaAngleForce
- getAmoebaGlobalAngleQuartic()
: AmoebaAngleForce
- getAmoebaGlobalAngleSextic()
: AmoebaAngleForce
- getAmoebaGlobalBondCubic()
: AmoebaBondForce
- getAmoebaGlobalBondQuartic()
: AmoebaBondForce
- getAmoebaGlobalInPlaneAngleCubic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAnglePentic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleQuartic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleSextic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalOutOfPlaneBendCubic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendPentic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendQuartic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendSextic()
: AmoebaOutOfPlaneBendForce
- getAngleParameters()
: AmoebaAngleForce
, AmoebaInPlaneAngleForce
, CustomAngleForce
, HarmonicAngleForce
- getApplyThermostat()
: RPMDIntegrator
- getAwater()
: AmoebaWcaDispersionForce
- getBondParameters()
: HarmonicBondForce
, AmoebaBondForce
, CustomBondForce
, CustomCentroidBondForce
, CustomCompoundBondForce
- getBoxVectors()
: AmberInpcrdFile
- getByAtomicNumber()
: Element
- getByMass()
: Element
- getBySymbol()
: Element
- getComputationStep()
: CustomIntegrator
- getComputedValueParameters()
: CustomGBForce
- getConstraintParameters()
: System
- getConstraintTolerance()
: Integrator
, CompoundIntegrator
- getContractions()
: RPMDIntegrator
- getCovalentMap()
: AmoebaMultipoleForce
- getCovalentMaps()
: AmoebaMultipoleForce
- getCurrentIntegrator()
: CompoundIntegrator
- getCutoff()
: AmoebaVdwForce
- getCutoffDistance()
: AmoebaMultipoleForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, GBSAOBCForce
, NonbondedForce
- getDefaultCollisionFrequency()
: AndersenThermostat
- getDefaultPeriodicBoxVectors()
: System
- getDefaultPluginsDirectory
: Platform
- getDefaultPressure()
: MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
, RPMDMonteCarloBarostat
- getDefaultSurfaceTension()
: MonteCarloMembraneBarostat
- getDefaultTemperature()
: AndersenThermostat
- getDispoff()
: AmoebaWcaDispersionForce
- getDonorParameters()
: CustomHbondForce
- getDrudeFriction()
: DrudeLangevinIntegrator
- getDrudeTemperature()
: DrudeLangevinIntegrator
- getE()
: AMDIntegrator
- getEffectiveEnergy()
: AMDIntegrator
, AMDForceGroupIntegrator
, DualAMDIntegrator
- getEGroup()
: AMDForceGroupIntegrator
, DualAMDIntegrator
- getElectrostaticPotential()
: AmoebaMultipoleForce
- getEnergyFunction()
: CustomAngleForce
, CustomBondForce
, CustomCentroidBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getEnergyTermParameters()
: CustomGBForce
- getEpsh()
: AmoebaWcaDispersionForce
- getEpsilonCombiningRule()
: AmoebaVdwForce
- getEpso()
: AmoebaWcaDispersionForce
- getErrorTolerance()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- getETotal()
: DualAMDIntegrator
- getEwaldErrorTolerance()
: AmoebaMultipoleForce
, NonbondedForce
- getExceptionParameters()
: NonbondedForce
- getExclusionParticles()
: CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getForce()
: System
- getForceGroup()
: Force
- getForces()
: State
, System
- getFrequency()
: CMMotionRemover
, MonteCarloAnisotropicBarostat
, MonteCarloBarostat
, MonteCarloMembraneBarostat
, RPMDMonteCarloBarostat
- getFriction()
: BrownianIntegrator
, DrudeLangevinIntegrator
, LangevinIntegrator
, RPMDIntegrator
, VariableLangevinIntegrator
- getFunctionParameters()
: Continuous1DFunction
, Continuous2DFunction
, Continuous3DFunction
, CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, Discrete1DFunction
, Discrete2DFunction
, Discrete3DFunction
- getGenerators()
: ForceField
- getGlobalParameterDefaultValue()
: CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
, CustomAngleForce
, CustomBondForce
, CustomCentroidBondForce
, CustomCompoundBondForce
, CustomExternalForce
- getGlobalParameterName()
: CustomAngleForce
, CustomBondForce
, CustomCentroidBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalVariable()
: CustomIntegrator
- getGlobalVariableByName()
: CustomIntegrator
- getGlobalVariableName()
: CustomIntegrator
- getGroupParameters()
: CustomCentroidBondForce
- getIncludeCavityTerm()
: AmoebaGeneralizedKirkwoodForce
- getInducedDipoles()
: AmoebaMultipoleForce
- getIntegrator()
: CompoundIntegrator
, Context
- getInteractionGroupParameters()
: CustomNonbondedForce
- getKineticEnergy()
: State
- getKineticEnergyExpression()
: CustomIntegrator
- getLocalPosition()
: LocalCoordinatesSite
- getMapParameters()
: CMAPTorsionForce
- getMaxDrudeDistance()
: DrudeLangevinIntegrator
- getMinimizationErrorTolerance()
: DrudeSCFIntegrator
- getMolecules()
: Context
- getMultipoleParameters()
: AmoebaMultipoleForce
- getMutualInducedMaxIterations()
: AmoebaMultipoleForce
- getMutualInducedTargetEpsilon()
: AmoebaMultipoleForce
- getName()
: Platform
- getNonbondedMethod()
: AmoebaMultipoleForce
, AmoebaVdwForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, GBSAOBCForce
, NonbondedForce
- getNumAcceptors()
: CustomHbondForce
- getNumAngles()
: AmoebaAngleForce
, AmoebaInPlaneAngleForce
, CustomAngleForce
, HarmonicAngleForce
- getNumAtoms()
: Topology
- getNumBonds()
: AmoebaBondForce
, CustomBondForce
, CustomCentroidBondForce
, CustomCompoundBondForce
, HarmonicBondForce
- getNumChains()
: Topology
- getNumComputations()
: CustomIntegrator
- getNumComputedValues()
: CustomGBForce
- getNumConstraints()
: System
- getNumCopies()
: RPMDIntegrator
- getNumDonors()
: CustomHbondForce
- getNumEnergyTerms()
: CustomGBForce
- getNumExceptions()
: NonbondedForce
- getNumExclusions()
: CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
- getNumForces()
: System
- getNumFrames()
: GromacsGroFile
, PDBFile
, PDBxFile
- getNumFunctions()
: CustomCentroidBondForce
, CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getNumGlobalParameters()
: CustomAngleForce
, CustomBondForce
, CustomCentroidBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomTorsionForce
- getNumGlobalVariables()
: CustomIntegrator
- getNumGroups()
: CustomCentroidBondForce
- getNumGroupsPerBond()
: CustomCentroidBondForce
- getNumIntegrators()
: CompoundIntegrator
- getNumInteractionGroups()
: CustomNonbondedForce
- getNumMaps()
: CMAPTorsionForce
- getNumMultipoles()
: AmoebaMultipoleForce
- getNumOutOfPlaneBends()
: AmoebaOutOfPlaneBendForce
- getNumParticles()
: NonbondedForce
, AmoebaWcaDispersionForce
, AmoebaGeneralizedKirkwoodForce
, AmoebaVdwForce
, CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
, DrudeForce
, GBSAOBCForce
, VirtualSite
, System
- getNumParticlesPerBond()
: CustomCompoundBondForce
- getNumParticlesPerSet()
: CustomManyParticleForce
- getNumPerAcceptorParameters()
: CustomHbondForce
- getNumPerAngleParameters()
: CustomAngleForce
- getNumPerBondParameters()
: CustomCompoundBondForce
, CustomBondForce
, CustomCentroidBondForce
- getNumPerDofVariables()
: CustomIntegrator
- getNumPerDonorParameters()
: CustomHbondForce
- getNumPerParticleParameters()
: CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
- getNumPerTorsionParameters()
: CustomTorsionForce
- getNumPiTorsions()
: AmoebaPiTorsionForce
- getNumPlatforms
: Platform
- getNumResidues()
: Topology
- getNumScreenedPairs()
: DrudeForce
- getNumStretchBends()
: AmoebaStretchBendForce
- getNumTabulatedFunctions()
: CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomGBForce
, CustomCentroidBondForce
, CustomCompoundBondForce
- getNumTorsions()
: CMAPTorsionForce
, CustomTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
- getNumTorsionTorsionGrids()
: AmoebaTorsionTorsionForce
- getNumTorsionTorsions()
: AmoebaTorsionTorsionForce
- getOpenMMVersion
: Platform
- getOriginWeights()
: LocalCoordinatesSite
- getOutOfPlaneBendParameters()
: AmoebaOutOfPlaneBendForce
- getParameter()
: Context
- getParameters()
: State
, Context
- getParticle()
: VirtualSite
- getParticleExclusions()
: AmoebaVdwForce
- getParticleMass()
: System
- getParticleParameters()
: AmoebaGeneralizedKirkwoodForce
, AmoebaVdwForce
, AmoebaWcaDispersionForce
, CustomExternalForce
, CustomManyParticleForce
, CustomNonbondedForce
, DrudeForce
, NonbondedForce
, GBSAOBCForce
, CustomGBForce
- getPerAcceptorParameterName()
: CustomHbondForce
- getPerAngleParameterName()
: CustomAngleForce
- getPerBondParameterName()
: CustomCentroidBondForce
, CustomCompoundBondForce
, CustomBondForce
- getPerDofVariable()
: CustomIntegrator
- getPerDofVariableByName()
: CustomIntegrator
- getPerDofVariableName()
: CustomIntegrator
- getPerDonorParameterName()
: CustomHbondForce
- getPeriodicBoxVectors()
: State
, Topology
, GromacsGroFile
- getPeriodicBoxVolume()
: State
- getPermutationMode()
: CustomManyParticleForce
- getPerParticleParameterName()
: CustomExternalForce
, CustomGBForce
, CustomManyParticleForce
, CustomNonbondedForce
- getPerTorsionParameterName()
: CustomTorsionForce
- getPiTorsionParameters()
: AmoebaPiTorsionForce
- getPlatform()
: Context
, Platform
- getPlatformByName
: Platform
- getPluginLoadFailures
: Platform
- getPmeBSplineOrder()
: AmoebaMultipoleForce
- getPmeGridDimensions()
: AmoebaMultipoleForce
- getPMEParameters()
: NonbondedForce
- getPMEParametersInContext()
: NonbondedForce
, AmoebaMultipoleForce
- getPolarizationType()
: AmoebaMultipoleForce
- getPositions()
: Modeller
, DesmondDMSFile
, GromacsGroFile
, PDBxFile
, State
, AmberInpcrdFile
, PDBFile
- getPotentialEnergy()
: State
- getProbeRadius()
: AmoebaGeneralizedKirkwoodForce
- getPropertyDefaultValue()
: Platform
- getPropertyNames()
: Platform
- getPropertyValue()
: Platform
- getProvenance()
: DesmondDMSFile
- getRandomNumberSeed()
: MonteCarloMembraneBarostat
, BrownianIntegrator
, VariableLangevinIntegrator
, MonteCarloAnisotropicBarostat
, RPMDMonteCarloBarostat
, MonteCarloBarostat
, LangevinIntegrator
, RPMDIntegrator
, CustomIntegrator
, DrudeLangevinIntegrator
, AndersenThermostat
- getReactionFieldDielectric()
: NonbondedForce
- getReciprocalSpaceForceGroup()
: NonbondedForce
- getRminh()
: AmoebaWcaDispersionForce
- getRmino()
: AmoebaWcaDispersionForce
- getScaleX()
: MonteCarloAnisotropicBarostat
- getScaleY()
: MonteCarloAnisotropicBarostat
- getScaleZ()
: MonteCarloAnisotropicBarostat
- getScreenedPairParameters()
: DrudeForce
- getShctd()
: AmoebaWcaDispersionForce
- getSigmaCombiningRule()
: AmoebaVdwForce
- getSlevy()
: AmoebaWcaDispersionForce
- getSoluteDielectric()
: AmoebaGeneralizedKirkwoodForce
, GBSAOBCForce
- getSolventDielectric()
: AmoebaGeneralizedKirkwoodForce
, GBSAOBCForce
- getSpeed()
: Platform
- getState()
: Context
, RPMDIntegrator
- getStepSize()
: Integrator
, CompoundIntegrator
- getStretchBendParameters()
: AmoebaStretchBendForce
- getSurfaceAreaEnergy()
: GBSAOBCForce
- getSurfaceAreaFactor()
: AmoebaGeneralizedKirkwoodForce
- getSwitchingDistance()
: CustomNonbondedForce
, NonbondedForce
- getSystem()
: Context
- getSystemMultipoleMoments()
: AmoebaMultipoleForce
- getTabulatedFunction()
: CustomNonbondedForce
, CustomManyParticleForce
, CustomGBForce
, CustomHbondForce
, CustomCompoundBondForce
, CustomCentroidBondForce
- getTabulatedFunctionName()
: CustomCompoundBondForce
, CustomHbondForce
, CustomManyParticleForce
, CustomNonbondedForce
, CustomGBForce
, CustomCentroidBondForce
- getTemperature()
: MonteCarloMembraneBarostat
, BrownianIntegrator
, RPMDIntegrator
, LangevinIntegrator
, VariableLangevinIntegrator
, MonteCarloBarostat
, MonteCarloAnisotropicBarostat
, DrudeLangevinIntegrator
- getTime()
: State
- getTopology()
: Modeller
, PDBxFile
, DesmondDMSFile
, PDBFile
- getTorsionParameters()
: PeriodicTorsionForce
, CustomTorsionForce
, CMAPTorsionForce
, RBTorsionForce
- getTorsionTorsionGrid()
: AmoebaTorsionTorsionForce
- getTorsionTorsionParameters()
: AmoebaTorsionTorsionForce
- getTotalEnergy()
: RPMDIntegrator
- getTypeFilter()
: CustomManyParticleForce
- getUnitCellDimensions()
: Topology
, GromacsGroFile
- getUseDispersionCorrection()
: AmoebaVdwForce
, NonbondedForce
- getUseLongRangeCorrection()
: CustomNonbondedForce
- getUseSwitchingFunction()
: CustomNonbondedForce
, NonbondedForce
- getVelocities()
: AmberInpcrdFile
, State
- getVirtualSite()
: System
- getWeight()
: TwoParticleAverageSite
, ThreeParticleAverageSite
- getWeight12()
: OutOfPlaneSite
- getWeight13()
: OutOfPlaneSite
- getWeightCross()
: OutOfPlaneSite
- getXWeights()
: LocalCoordinatesSite
- getXYMode()
: MonteCarloMembraneBarostat
- getYWeights()
: LocalCoordinatesSite
- getZMode()
: MonteCarloMembraneBarostat
- group_list
: CharmmPsfFile
- groups_mask
: Context
, RPMDIntegrator